PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_2ECC216F7.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 889aa    MW: 100857 Da    PI: 8.6562
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_2ECC216F7.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.54.1e-2268158291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                            fY+++A++vGF vr+ ++k    ++ + +++++Cs +g+r+e+ k+   + +++r+r++tr+gC+a++ vk+ + ++++++++ ++Hn
  Traes_2BL_2ECC216F7.2  68 FYKSFAHRVGFGVRVGQQKVV--DNVVESKRYMCSSQGFRSEKGKRnvkAANKKRKREVTRCGCDAHIYVKRCSGNTYKIHSMIEQHN 153
                            9***************99888..889****************9999787788999********************************* PP

                   FAR1  87 Helap 91 
                            H ++p
  Traes_2BL_2ECC216F7.2 154 HGFVP 158
                            *9875 PP

2FAR172.31.1e-22201291190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                            +fY++YA+++GF+vr+ ++k   +++ +  ++f+Cs+eg+r+++ ++  +ek++r+ ++tr+gC+a+++v+  + ++++v++l ++Hn
  Traes_2BL_2ECC216F7.2 201 EFYKSYARHCGFKVRVGQHKLL-NKEVVQFKRFMCSREGFRSDKGEDpsNEKKKRNVKVTRCGCNAHIVVRWCSGNTYKVSSLIEHHN 287
                            6****************99887.777799**************99998889999999******************************* PP

                   FAR1  87 Hela 90 
                            H l+
  Traes_2BL_2ECC216F7.2 288 HGLV 291
                            *997 PP

3FAR171.12.5e-22339430190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                            +fY++YA+++GFsvr+ + k   +n+ + +++f+Cs+eg+r+e+       +++r+ r++tr+gC+a++ vk+ +d+k+++t+  ++H
  Traes_2BL_2ECC216F7.2 339 EFYKSYAHHCGFSVRVGQRKLL-NNEVVQWKRFMCSREGFRSEKCMGvddPSRKRKVRKVTRCGCDARIIVKRCTDNKYKITSWIEHH 425
                            6****************97766.8999****************9887777889999******************************** PP

                   FAR1  86 nHela 90 
                            nH ++
  Traes_2BL_2ECC216F7.2 426 NHGFV 430
                            **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1968158IPR004330FAR1 DNA binding domain
PfamPF031013.8E-20201291IPR004330FAR1 DNA binding domain
PfamPF031015.9E-20339430IPR004330FAR1 DNA binding domain
PfamPF105516.0E-22551640IPR018289MULE transposase domain
PROSITE profilePS509669.965820869IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-5822861IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-5844871IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MESVTIVQAQ PFAGINSPLL LDEGRPGTPD RDTTSMPQPC STSTSECADE SKPALGMTFE  60
GLEAVEAFYK SFAHRVGFGV RVGQQKVVDN VVESKRYMCS SQGFRSEKGK RNVKAANKKR  120
KREVTRCGCD AHIYVKRCSG NTYKIHSMIE QHNHGFVPPD KLHLIRSNRG ASEKEKVIPD  180
CDEALRPSIG MAFEGLSSAE EFYKSYARHC GFKVRVGQHK LLNKEVVQFK RFMCSREGFR  240
SDKGEDPSNE KKKRNVKVTR CGCNAHIVVR WCSGNTYKVS SLIEHHNHGL VSPDKVTKSK  300
RRVSEKAKNK LSSSLVPECD EAMKPSVGMV FEDIGSVEEF YKSYAHHCGF SVRVGQRKLL  360
NNEVVQWKRF MCSREGFRSE KCMGVDDPSR KRKVRKVTRC GCDARIIVKR CTDNKYKITS  420
WIEHHNHGFV SPDKCHLIRS NRQLSDKAKP TVSTHCKAST CTSQANQPDH VSEGRSDNVG  480
CTKRDLQKYH HDLCSKIKNE DAQIFVAQLC RKQQEDSAFF FDCDVDDQGM LVHVFWADAT  540
SRKNYIYFSD ILTFDSTNTM NQHGMIFAPF TGTNHHLQSV SFGAAFLADE KIESYAWLFQ  600
TFLRAMGGVS PKTIVTRENN RMKAAISNVL PATTHRLCML EMLGRMPEKV EPSLRNNPLF  660
QTRMNECVLG SETVVEFESK WESIISDFGL QGNQWLAERY STRERWILAY STDVHLSGIL  720
RSTAWSKSAK SFFNCFINQK LSLVEFWLRF EAALECQRQE ESNADHTSAY TTPQLITPWG  780
LEKHGSVVFT HEVFERFQEE IVAARDHCVV EDMAQNEGVK TVAIGGDDSD KVREVRWDAV  840
AMTANCSCKL FESVGIPCRH INLVLRSSEL NELPSSCVLK RWQKSAKFG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467387.10.0hypothetical protein SORBIDRAFT_01g026910
TrEMBLW5B8A00.0W5B8A0_WHEAT; Uncharacterized protein
STRINGMLOC_19788.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-99FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]